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But the science agency says it will continue to create more genetically engineered animals using new research methods.
The state research organisation has issued reports into trials conducted at its Ruakura centre that detail chronic arthritis, pneumonia, lameness and blood poisoning among the causes of cattle, sheep and goat deaths.
The reports, made available to The Dominion Post under the Official Information Act, refer to trials including those carried out on genetically engineered animals being developed to produce a kind of super milk, as well as animals being cloned.
Other trials where deaths occurred included those looking for resistance to eczema in sheep, exploring feeding motivation in pregnant sheep, and collecting tissue from genetically modified embryos.
Applied biotechnologies general manager Jimmy Suttie said that after 13 years of studying how to prevent abnormalities forming in cloned animals, AgResearch had ended its cloning research.
"The decision was made, enough is enough."
Only about 10 per cent of cloned animals survived through the trials, with the main problems...